PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0808s0059.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 547aa    MW: 60781.8 Da    PI: 8.0682
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0808s0059.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.97.9e-15741135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Kaladp0808s0059.1.p  7 CCHCGVTSTPLWRNGPADKPVLCNACGSRWRTKGS 41
                         99**************77777***********997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.0E-7155IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-11546No hitNo description
CDDcd002022.76E-15655No hitNo description
PfamPF003202.2E-12741IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.385740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.3E-12741IPR013088Zinc finger, NHR/GATA-type
PfamPF139193.8E-8285378IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MGKQGPCCHC GVTSTPLWRN GPADKPVLCN ACGSRWRTKG SLTNYTPLHA RAEPEDYEIN  60
KHPRAKTISI NKQKEVKLVK RKQFYETECR SMGGAFSDSR SLSNYMDQDA SYRSSSGSAI  120
SNSESCGQFS KVEASELTDP DKSIIFDSVV TPKKKIVIPR SKPSPVQKLT RDLCTILHEQ  180
QQSYFSGSSE EDLLFNTATP MASMETGHGS VLIRHPSSIG QEEESEASSL TFDNKPCPGL  240
RSCLTPHNLV VNNKIKDSKF QFSGLEKSRK FSDLEMQQEQ IKRAKLQNEK LQILGNHNSP  300
LRTVDLKEIL NFKEFATHLT TEEHHRLLKY LPPSDIAPFP ESLITMFDSA HFVENLSSFQ  360
QLLAEGVFDI TLSGVKAEDC KTLRRFALSN LTKSKWVEHY NLLKKCRNGF TSSVVPGMHS  420
GVATMNIAKI KRPRDGSDTD LPDAKSAMKC PKRVTLKDMD KNKTALDNTA SCFSPKNLFA  480
LPPDNSSLAL DSFQYADDNA EQEDLLLDVP LSNSFPQAEL LHPTSNHGAL LTSPCSSSVY  540
PNLIRH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011031967.10.0PREDICTED: GATA transcription factor 26-like
TrEMBLA9PFA90.0A9PFA9_POPTR; Uncharacterized protein
STRINGPOPTR_0003s08080.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-120GATA transcription factor 26